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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
21/07/2023 |
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Actualizado : |
21/07/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
QUEZADA, M.; GIORELLO, F.; DA SILVA, C.; AGUILAR, I.; BALMELLI, G. |
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Afiliación : |
MARIANELLA FERNANDA QUEZADA MACCHIAVELLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Laboratorio de Biotecnología, Departamento de Biología Vegetal, Facultad de Agronomía, Universidad de la República, Montevideo, Uruguay; FACUNDO MATÍAS GIORELLO, PDU Espacio de Biología Vegetal del Noreste, sede Tacuarembó, CENUR Noreste, Universidad de la República, Tacuarembó, Uruguay; CECILIA CORINA DA SILVA, PDU Espacio de Biología Vegetal del Noreste, sede Tacuarembó, CENUR Noreste, Universidad de la República, Tacuarembó, Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GUSTAVO DANIEL BALMELLI HERNANDEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Single-step genome-wide association study for susceptibility to Teratosphaeria nubilosa and precocity of vegetative phase change in Eucalyptus globulus. |
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Complemento del título : |
Original Research article. Sec. Plant Breeding. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Frontiers in Plant Science. 2023, Volume 14, 1124768. https://doi.org/10.3389/fpls.2023.1124768 -- OPEN ACCESS. |
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DOI : |
10.3389/fpls.2023.1124768 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 15 December 2022; Accepted 24 May 2023; Published 03 July 2023. -- Correspondence auhtor: Gustavo Balmelli
gbalmelli@inia.org.uy -- Edited by: Shixiao Yu, Sun Yat-sen University, China. -- Reviewed by: Paulino Pérez-Rodríguez, Colegio de Postgraduados (COLPOS), Mexico; Sanushka Naidoo, University of Pretoria, South Africa. -- FUNDING: This work was supported by the Instituto Nacional de Investigación Agropecuaria (INIA). MQ received a postdoctoral fellowship from INIA. -- SUPPLEMENTARY MATERIAL: The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2023.1124768/full#supplementary-material -- LICENSE: This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (http://creativecommons.org/licenses/by/4.0/ ) |
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Contenido : |
Mycosphaerella leaf disease (MLD) is one of the most prevalent foliar diseases of E. globulus plantations around the world. Since resistance management strategies have not been effective in commercial plantations, breeding to develop more resistant genotypes is the most promising strategy. Available genomic information can be used to detect genomic regions associated with resistance to MLD, which could significantly speed up the process of genetic improvement. In this study, we investigated the genetic basis of MLD resistance in a breeding population of E. globulus which was genotyped with the EUChip60K SNP array. Resistance to MLD was evaluated for resistance of the juvenile foliage, as defoliation and leaf spot severity, and for precocity of change to resistant adult foliage. Genome-wide association studies (GWAS) were carried out applying four Single-SNP models, a Genomic Best Linear Unbiased Prediction (GBLUP-GWAS) approach, and a Single-step genome-wide association study (ssGWAS). The Single-SNP and GBLUP-GWAS models detected 13 and 16 SNP-trait associations in chromosomes 2, 3 y 11; whereas the ssGWAS detected 66 SNP-trait associations in the same chromosomes, and additional significant SNP-trait associations in chromosomes 5 to 9 for the precocity of phase change (proportion of adult foliage). For this trait, the two main regions in chromosomes 3 and 11 were identified for the three approaches. The SNPs identified in these regions were positioned near the key miRNA genes, miR156.5 and miR157.4, which have a main role in the regulation of the timing of vegetative change, and also in the response to environmental stresses in plants. Our results outlined that ssGWAS was more powerful in detecting regions that affect resistance than conventional GWAS approaches. Additionally, suggest a polygenic genetic architecture for the heteroblastic transition in E. globulus and identified useful SNP markers for the development of marker-assisted selection strategies for resistance.
Copyright © 2023 Quezada, Giorello, Da Silva, Aguilar and Balmelli. MenosMycosphaerella leaf disease (MLD) is one of the most prevalent foliar diseases of E. globulus plantations around the world. Since resistance management strategies have not been effective in commercial plantations, breeding to develop more resistant genotypes is the most promising strategy. Available genomic information can be used to detect genomic regions associated with resistance to MLD, which could significantly speed up the process of genetic improvement. In this study, we investigated the genetic basis of MLD resistance in a breeding population of E. globulus which was genotyped with the EUChip60K SNP array. Resistance to MLD was evaluated for resistance of the juvenile foliage, as defoliation and leaf spot severity, and for precocity of change to resistant adult foliage. Genome-wide association studies (GWAS) were carried out applying four Single-SNP models, a Genomic Best Linear Unbiased Prediction (GBLUP-GWAS) approach, and a Single-step genome-wide association study (ssGWAS). The Single-SNP and GBLUP-GWAS models detected 13 and 16 SNP-trait associations in chromosomes 2, 3 y 11; whereas the ssGWAS detected 66 SNP-trait associations in the same chromosomes, and additional significant SNP-trait associations in chromosomes 5 to 9 for the precocity of phase change (proportion of adult foliage). For this trait, the two main regions in chromosomes 3 and 11 were identified for the three approaches. The SNPs identified in these regions were positioned near the key miRNA ge... Presentar Todo |
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Palabras claves : |
Genome-wide association study (GWAS); Heteroblastic transition; Leaf disease; Single-step genome-wide association study (ssGWAS). |
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Thesagro : |
EUCALYPTUS. |
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Asunto categoría : |
A50 Investigación agraria |
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URL : |
https://www.frontiersin.org/articles/10.3389/fpls.2023.1124768/pdf
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Marc : |
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024 7 $a10.3389/fpls.2023.1124768$2DOI
100 1 $aQUEZADA, M.
245 $aSingle-step genome-wide association study for susceptibility to Teratosphaeria nubilosa and precocity of vegetative phase change in Eucalyptus globulus.$h[electronic resource]
260 $c2023
500 $aArticle history: Received 15 December 2022; Accepted 24 May 2023; Published 03 July 2023. -- Correspondence auhtor: Gustavo Balmelli gbalmelli@inia.org.uy -- Edited by: Shixiao Yu, Sun Yat-sen University, China. -- Reviewed by: Paulino Pérez-Rodríguez, Colegio de Postgraduados (COLPOS), Mexico; Sanushka Naidoo, University of Pretoria, South Africa. -- FUNDING: This work was supported by the Instituto Nacional de Investigación Agropecuaria (INIA). MQ received a postdoctoral fellowship from INIA. -- SUPPLEMENTARY MATERIAL: The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2023.1124768/full#supplementary-material -- LICENSE: This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (http://creativecommons.org/licenses/by/4.0/ )
520 $aMycosphaerella leaf disease (MLD) is one of the most prevalent foliar diseases of E. globulus plantations around the world. Since resistance management strategies have not been effective in commercial plantations, breeding to develop more resistant genotypes is the most promising strategy. Available genomic information can be used to detect genomic regions associated with resistance to MLD, which could significantly speed up the process of genetic improvement. In this study, we investigated the genetic basis of MLD resistance in a breeding population of E. globulus which was genotyped with the EUChip60K SNP array. Resistance to MLD was evaluated for resistance of the juvenile foliage, as defoliation and leaf spot severity, and for precocity of change to resistant adult foliage. Genome-wide association studies (GWAS) were carried out applying four Single-SNP models, a Genomic Best Linear Unbiased Prediction (GBLUP-GWAS) approach, and a Single-step genome-wide association study (ssGWAS). The Single-SNP and GBLUP-GWAS models detected 13 and 16 SNP-trait associations in chromosomes 2, 3 y 11; whereas the ssGWAS detected 66 SNP-trait associations in the same chromosomes, and additional significant SNP-trait associations in chromosomes 5 to 9 for the precocity of phase change (proportion of adult foliage). For this trait, the two main regions in chromosomes 3 and 11 were identified for the three approaches. The SNPs identified in these regions were positioned near the key miRNA genes, miR156.5 and miR157.4, which have a main role in the regulation of the timing of vegetative change, and also in the response to environmental stresses in plants. Our results outlined that ssGWAS was more powerful in detecting regions that affect resistance than conventional GWAS approaches. Additionally, suggest a polygenic genetic architecture for the heteroblastic transition in E. globulus and identified useful SNP markers for the development of marker-assisted selection strategies for resistance. Copyright © 2023 Quezada, Giorello, Da Silva, Aguilar and Balmelli.
650 $aEUCALYPTUS
653 $aGenome-wide association study (GWAS)
653 $aHeteroblastic transition
653 $aLeaf disease
653 $aSingle-step genome-wide association study (ssGWAS)
700 1 $aGIORELLO, F.
700 1 $aDA SILVA, C.
700 1 $aAGUILAR, I.
700 1 $aBALMELLI, G.
773 $tFrontiers in Plant Science. 2023, Volume 14, 1124768. https://doi.org/10.3389/fpls.2023.1124768 -- OPEN ACCESS.
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INIA Las Brujas (LB) |
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| Registros recuperados : 9 | |
| 2. |  | NIETO, N.; DA SILVA, C.; CONIBERTI, A.; BOIDO, E.; CARRAU, F.; DELLACASSA, E.; FARIÑA, L. Estudio de precursores aromáticos en clones comerciales de Tannat y seguimiento de su evolución durante la maduración. [Study of aromatic precursors in commercial Tannat clones and monitoring of their evolution during ripening.]. [conference proceedings]. BIO Web of Conferences. 2023, Volume 68, Article 01045. 44th World Congress of Vine and Wine, OIV 2023, Cadiz/Jerez, 5 - 9 June 2023. https://doi.org/10.1051/bioconf/20236801045 Article history: Published online 6 December 2023. -- Document type: Conference Paper, Gold Open Access, Green Open Access. --
Publisher: EDP Sciences. -- Funding: Beca CAP finalización de Maestría Nicolas Nieto. Beca maestría ANII...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 3. | | GIORELLO, F.; FARÍAS, J.; BASILE, P.; BALMELLI, G.; DA SILVA, C. Evaluando el potencial del XP-GWAS en Eucalyptus; la heteroblastia foliar como caso de estudio. 354. (resúmen). Conferencia 13. Mesa SUG Sociedad Uruguay de Genética. In: Physiological Mini Reviews, 2022, volume 15, Special Issue: III (3er) Congreso Nacional de Biociencias Octubre 2022, Montevideo, Uruguay. p.63. Resumen publicado en las jornadas de BIOCIENCIAS: II Jornadas Binacionales Argentina-Uruguay; III Congreso Nacional 2022 "Ciencia para el desarrollo sustentable".| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 4. | | GIORELLO, F.M.; FARIAS, J.; BASILE, P.; BALMELLI, G.; DA SILVA, C.C. Evaluating the potential of XP-GWAS in Eucalyptus: Leaf heteroblasty as a case study. Plant Gene. December 2023, Volume 36, article 100430. https://doi.org/10.1016/j.plgene.2023.100430 Article history: Received 3 February 2023, Revised 24 July 2023, Accepted 11 August 2023, Available online 22 August 2023, Version of Record 31 August 2023. -- Correspondence: Giorello, F.M.; Espacio de Biología Vegetal del Noreste,...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | BALMELLI, G.; SIMETO, S.; CASTILLO, A.; GASPARRI, P.; CABRERA, D.; AGUILAR, I.; QUEZADA, M.; DA SILVA, C.; GIORELLO, F. Breeding for resistance to Teratosphaeria nubilosa on Eucalyptus globulus. In: Pesquisa florestal brasileira = Brazilian journal of forestry research., v. 39, e201902043, Special issue, 2019. Colombo : Embrapa Florestas, 2019. Congreso IUFRO, 25., Curitiba, Brasil, 29 setiembre-05 octubre, 2019. Abstracts. p. 173| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Tacuarembó. |
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| 8. | | ARMSTRONG E.; CIAPPESONI, G.; IRIARTE, W.; DA SILVA, C.; MACEDO, F.; NAVAJAS, E.; BRITO, G.; SAN JULIÁN, R.; GIMENO, D.; POSTIGLIONI A. Novel genetic polymorphisms associated with carcass traits in grazing Texel sheep. Meat Science, November 2018, Volume 145, Pages 202-208. Article history: Received 15 September 2017 // Revised 11 May 2018 // Accepted 12 June 2018 // Available online 22 June 2018..| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | TORRES, D.; GONZALEZ, A.; GARRIDO, J.; DA SILVA, C.; DOS SANTOS, W.; LEMOS, D.C.; CASTILLO, D.; DA SILVA, J.R.; DE MORAES, M.T.; FREITAS, M.L.M; DE SOUZA, V.A.; SEBBENN, A.M.; DE AGUIAR, A.V. Strategic genetic resources from Uruguay, the Southern limit of the Atlantic forest, on the current scenario of climate change. In: Pesquisa florestal brasileira = Brazilian journal of forestry research., v. 39, e201902043, Special issue, 2019. Colombo : Embrapa Florestas, 2019. Congreso IUFRO, 25., Curitiba, Brasil, 29 setiembre-05 octubre, 2019. Abstracts. p. 269| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Tacuarembó. |
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| Registros recuperados : 9 | |
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